Shell Scripts
====
To run available shell scripts, go to your temineral, type the name of the script, and any required arguments. For the plotting scripts, usually the 
path to the folder in which the run was done is required. To see more information about the script including required arguments: 

.. code-block:: bash

    script_name --help

The following shell scripts are available in the MITIM-fusion repository:

**Plotting tools**

- mitim_plot_gacode
- mitim_plot_tgyro
- mitim_plot_tglf
- mitim_plot_cgyro
- mitim_plot_eq
- mitim_plot_transp
- mitim_plot_opt
- mitim_plot_portals
- mitim_plot_maestro

**TRANSP**

- mitim_trcheck
- mitim_trcheck_p 
- mitim_trclean
- mitim_trlook 
- mitim_run_transp

**Miscellaneous**

- mitim_run_tglf
- mitim_slurm 
- mitim_compare_nml
- mitim_scp